Write Sample QC table

Source: R/QC.R

Writes NULISAseq QC sample flags

QCFlagSample(
  raw,
  aboveLOD,
  samples,
  targets,
  QCS = NULL,
  SN = NULL,
  well_order = NULL,
  ICs = NULL,
  IPCs = NULL,
  NCs = NULL,
  SCs = NULL,
  TAP = TRUE,
  xmlThresh = NULL,
  forceDefaults = FALSE
)

Arguments

raw

unnormalized data

aboveLOD

aboveLOD from the lod function

samples

samples data frame

targets

targets data frame

QCS

QCS values

SN

SN values

ICs

name of IC samples

IPCs

names of IPC samples

NCs

names of NC samples

SCs

names of SC samples

TAP

whether this is a TAP run

xmlThresh

Parsed XML QC thresholds (from readQCThresholdXMLNode) to override defaults, or NULL

forceDefaults

If TRUE, ignore xmlThresh and use hardcoded defaults only

Value

QC table

Examples

# QCFlagSample(inputtable)