Write Target QC table

Source: R/QC.R

Writes NULISAseq QC target flags

QCFlagTarget(
  AQdata,
  raw,
  IPCnormed,
  detectability,
  aboveLOD,
  withinDR,
  absRun,
  targets,
  samples,
  SCparams,
  ICs = NULL,
  IPCs = NULL,
  NCs = NULL,
  SCs = NULL,
  advancedQC = FALSE,
  xmlThresh = NULL,
  forceDefaults = FALSE,
  TAP = TRUE
)

Arguments

AQdata

Absolute quantification data

raw

Raw data

IPCnormed

IPC-normalized data

detectability

detectability

aboveLOD

aboveLOD

withinDR

withinDR

absRun

whether the assay is absolute quantification

targets

targets data

samples

samples data

SCparams

SC concentrations

ICs

names of IC samples

IPCs

names of IPC samples

NCs

names of NC samples

SCs

names of SC samples

xmlThresh

Parsed XML QC thresholds (from readQCThresholdXMLNode) to override defaults, or NULL

forceDefaults

If TRUE, ignore xmlThresh and use hardcoded defaults only

TAP

Whether this is a TAP run; gates XML thresholds marked appliesWhen="TAP"

Value

QC table

Examples

# QCFlagTarget(inputtable)