Plot Plate Layout with Well Type Coloring — plot

This function generates plots and HTML tables for plate layouts, highlighting various well types (IPC, NC, SC).

plot_plateLayout(
  runs,
  output_dir = NULL,
  plate_names = NULL,
  colors = NULL,
  col_width = "1.75cm",
  font_size = 8
)

Arguments

runs: runs A named list of run data output from loadNULISAseq() function or a list of these outputs for multiple runs.
plate_names: A vector of plate names, default is NULL and will be inferred from `runs`.
colors: A vector of colors for different well types (IPC, NC, etc.), default is NULL to use a predefined color palette. `colors[1]` is the color of wells with no well type, and `colors[j + 1]` is the color of well type `j` (IPC, NC, then SC when present). The vector needs at least one more entry than the number of well types.
col_width: The column width for the HTML table.
font_size: The font size for the HTML table.

A list of HTML elements with tables and plots for each plate layout.